CytoML

• cytobank experiment to GatingSet
• Import FlowJo workspace to R

cytoqc

• B Cells
• DC Panel

flowCore

flowWorkspace

• FlowWorkspace Introduction
• How to merge/standardize GatingSets

ggcyto

• ggcyto : Visualize Cytometry data with ggplot2
• Visualize flowSet with ggcyto
• Visualize GatingSet with ggcyto
• Quick plot for cytometry data
• Add overlay plot with ggplot2
• 1d histogram/density plot of cytometry data with ggplot2
• 2d scatter plot of cytometry data with ggplot2
• Visualize gates on cytometry data with ggplot2

openCyto

• An Introduction to the openCyto package
• How to use different auto gating functions
• How to write a csv gating template
• Negative control based gating
• clustering gating by kmeans